python: refresh patches make package/python/refresh cmd

This was a bit overdue.
I did not know about this methodology.
Reduces patch fuzz.

Signed-off-by: Alexandru Ardelean <ardeleanalex@gmail.com>

lang/python/python/patches/002-do-not-add-include-dirs-when-cross-compiling.patch

@@ -1,8 +1,6 @@
-diff --git a/setup.py b/setup.py
-index cbdeaf3..5154412 100644
 --- a/setup.py
 +++ b/setup.py
-@@ -480,7 +480,8 @@ class PyBuildExt(build_ext):
+@@ -497,7 +497,8 @@ class PyBuildExt(build_ext):
                          add_dir_to_list(dir_list, directory)
  
          if os.path.normpath(sys.prefix) != '/usr' \