treewide: Run refresh on all packages

The crude loop I wrote to come up with this changeset:

  find -L package/feeds/packages/ -name patches | \
  sed 's/patches$/refresh/' | sort | xargs make

Signed-off-by: Ilya Lipnitskiy <ilya.lipnitskiy@gmail.com>

utils/pcsc-tools/patches/001-disable-atr.patch

@@ -1,11 +1,9 @@
 Disable the analyze ATR perl-script and as we don't want to pull in perl
 as a dependency.
 
-diff --git a/pcsc_scan.c b/pcsc_scan.c
-index d89bc3e..134b675 100644
 --- a/pcsc_scan.c
 +++ b/pcsc_scan.c
-@@ -241,7 +241,7 @@ static void initialize_options(options_t *options, const char *pname)
+@@ -241,7 +241,7 @@ static void initialize_options(options_t
  #ifdef WIN32
  	options->analyse_atr = False;
  #else