treewide: Run refresh on all packages

The crude loop I wrote to come up with this changeset:

  find -L package/feeds/packages/ -name patches | \
  sed 's/patches$/refresh/' | sort | xargs make

Signed-off-by: Ilya Lipnitskiy <ilya.lipnitskiy@gmail.com>
(cherry picked from commit 5d8d4fbbcb)
Signed-off-by: Jeffery To <jeffery.to@gmail.com>

utils/qemu/patches/0003-configure-enable-guest_agent-no-matter-whether-softm.patch

@@ -12,8 +12,6 @@ Fixes a512590 ("configure: qemu-ga is only needed with softmmu targets")
  configure | 2 +-
  1 file changed, 1 insertion(+), 1 deletion(-)
 
-diff --git a/configure b/configure
-index cf3f8ffdd7..b4af83a01f 100755
 --- a/configure
 +++ b/configure
 @@ -6414,7 +6414,7 @@ fi